Cell information vs Gene expression

Cell information and gene expression side-by-side on low-dimensional represention.

Dimension Reduction

Cell information

Download PNG Download PDF Download SVG

Cell numbers / statistics

Gene expression


Cell info vs cell info

Two cell infos side-by-side on low-dimensional represention.

Dimension Reduction

Cell info 1

Cell info 2


Gene expression vs Gene expression

Visualise two gene expressions side-by-side on low-dimensional representions.

Dimension Reduction

Gene expression 1

Gene expression 2


Gene expression

Explore gene expression on low-dimensional represention.


Coexpression of two genes on reduced dimensions

Visualise the coexpression of two genes on low-dimensional representions.

Dimension Reduction

Cell numbers


Cell information / gene expression violin plot / box plot

Visualise the gene expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).


Proportion / cell numbers across different cell information

Visualise the composition of single cells based on one discrete cell information across another discrete cell information.


Gene expression bubbleplot / heatmap

Visualise the gene expression patterns of multiple genes grouped by categorical cell information (e.g. library / cluster). The normalised expression are averaged, log-transformed and then plotted.


Markers

Explore markers for different clustering.


Cell information vs Gene expression

Cell information and gene expression side-by-side on low-dimensional represention.

Dimension Reduction

Cell information

Download PNG Download PDF Download SVG

Cell numbers / statistics

Gene expression


Cell info vs cell info

Two cell infos side-by-side on low-dimensional represention.

Dimension Reduction

Cell info 1

Cell info 2


Gene expression vs Gene expression

Visualise two gene expressions side-by-side on low-dimensional representions.

Dimension Reduction

Gene expression 1

Gene expression 2


Gene expression

Explore gene expression on low-dimensional represention.


Coexpression of two genes on reduced dimensions

Visualise the coexpression of two genes on low-dimensional representions.

Dimension Reduction

Cell numbers


Cell information / gene expression violin plot / box plot

Visualise the gene expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).


Proportion / cell numbers across different cell information

Visualise the composition of single cells based on one discrete cell information across another discrete cell information.


Gene expression bubbleplot / heatmap

Visualise the gene expression patterns of multiple genes grouped by categorical cell information (e.g. library / cluster). The normalised expression are averaged, log-transformed and then plotted.


Markers

Explore markers for different clustering.


Cell information vs Gene expression

Cell information and gene expression side-by-side on low-dimensional represention.

Dimension Reduction

Cell information

Download PNG Download PDF Download SVG

Cell numbers / statistics

Gene expression


Cell info vs cell info

Two cell infos side-by-side on low-dimensional represention.

Dimension Reduction

Cell info 1

Cell info 2


Gene expression vs Gene expression

Visualise two gene expressions side-by-side on low-dimensional representions.

Dimension Reduction

Gene expression 1

Gene expression 2


Gene expression

Explore gene expression on low-dimensional represention.


Coexpression of two genes on reduced dimensions

Visualise the coexpression of two genes on low-dimensional representions.

Dimension Reduction

Cell numbers


Cell information / gene expression violin plot / box plot

Visualise the gene expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).


Proportion / cell numbers across different cell information

Visualise the composition of single cells based on one discrete cell information across another discrete cell information.


Gene expression bubbleplot / heatmap

Visualise the gene expression patterns of multiple genes grouped by categorical cell information (e.g. library / cluster). The normalised expression are averaged, log-transformed and then plotted.


Markers

Explore markers for different clustering.


Cell information vs Gene expression

Cell information and gene expression side-by-side on low-dimensional represention.

Dimension Reduction

Cell information

Download PNG Download PDF Download SVG

Cell numbers / statistics

Gene expression


Cell info vs cell info

Two cell infos side-by-side on low-dimensional represention.

Dimension Reduction

Cell info 1

Cell info 2


Gene expression vs Gene expression

Visualise two gene expressions side-by-side on low-dimensional representions.

Dimension Reduction

Gene expression 1

Gene expression 2


Gene expression

Explore gene expression on low-dimensional represention.


Coexpression of two genes on reduced dimensions

Visualise the coexpression of two genes on low-dimensional representions.

Dimension Reduction

Cell numbers


Cell information / gene expression violin plot / box plot

Visualise the gene expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).


Proportion / cell numbers across different cell information

Visualise the composition of single cells based on one discrete cell information across another discrete cell information.


Gene expression bubbleplot / heatmap

Visualise the gene expression patterns of multiple genes grouped by categorical cell information (e.g. library / cluster). The normalised expression are averaged, log-transformed and then plotted.


Markers

Explore markers for different clustering.


About

Datasets

Reynolds et al, 2021

Li et al, 2021

Solé-Boldo et al, 2020

Gao et al, 2021

He et al, 2020


2022 | Marle & Taija